fass doch mal kurz zusammen, was /wo der Clou ist !
hier noch die vollen genome von 12 mexikanischen 'Viren.
2 verschiedene HP : in Puebla und Queretaro
Code:
000000000000000000000000000000011111111111111111112222 0000000000000000000000000011111111111111111112222222 00000000000000000000000000000111111111111111111222 000000000000000000000000000000000000000000000000000000000000000000011111 000000000000000000000000000111111 0000000000000000000000000000000000011111111111111 000000000000000000000000 0000000000000000000000000000000
011122223333344445556666777788901233333444556668890022 0012223333344455666667889900111344666667778990111222 11122222333333444444566678899000001122344555567001 000001111112222222333333333444444555555555666667777777777788888899900000 011222333333344444455677899001233 0011112223333444455556778888899999900000011122222 012222334456667777888889 0011111122222233444445666666777
447923580699914772891139237912007916789356012449963403 5832290266955666024593374703146748022385785020259124 24501778011377013489705792448155697828958045685784 788990112790113489123356668002459123345559355591123345789945558946701344 425479001346912456701826445261658 5617791890248035817880261234824456712278912800488 690678150622391168014679 5804588900577847334780556788049
511884227013611478580760683208583375992885083244697705 7725813716901947072465195582387101879538924237410161 07963790359368884402332802861813020584928075912155 928142481555010485682322455364329766890499826970190621974573674964032346 030061095849613138473468187993906 6480245655295937444124261951380307685627916305358 859563386998970496591658 0903557303378415590926249748248
-codon-position------------------------------------ 1 1 112 2 2 2 1 1 1 1 1 11 1 11 2 2 1 2 1 1 1 1 12 1 1 21 11 1 1 1 21 1 1 11111 111 1 121 1112 121211112211121 1212212212 1111212 111222111111 2 1 22 1 1 21121221121111111112 1211111111121112 111111 2111 2 21 1111111 12 1 1 1222 221222112211222 122221 2 1
---Index-------------------------------------------AAGCTGACCCGCAGATCCGGGAATTAATCAAACTCTTTCAGGGCGAATTCGGTA AAACGTTAGCTATGAAAAAGGGTTCGCCAGCCGGAAATAGAGCCCGCTCCGG TCTTAAGATCGTGACCACACAGGTCTTAACGACGGCTGACAAGTTGACTC CACTTCCAGGGTAACTTAGTGCGGCGTCTATGTAGATAAAGTAGCAGGAAGCGGCTACTAAGGGTCCACCGG CAAAACTCGAGGGATTGCGTTAGGCCCGAGTCG GAGGGGATGACCCTTGCCCGAATGCAACAAGCACTCAACTTCGCAAATT GATCTGGGCCAGTCCAGCGTTTCG GGGTACTTAATGCTCGCTTACAAGCGCAGGG
1 >A/chicken/Puebla/231-5284/98 (H5N2) G.A..AG...ATG.G...A.....------------------------------ .....CC...C...-------------------------------------- C.C.GG..CA..A....TGA------------------------------ ..........A...TCA.T..T..A.C..CCACGAG...T.AGAT...TGATA.T...CG.........TA. TGGG...T.GAAAGGC...CC------------ A.T.A...AG.T...A..TAG..A..GT...TG.....A.....C..CC ...........A.T.G..A....A A....TC..GA..CA.A..TATG.T..G.AA 456 216 , 183 106 1:>A/chicken/Puebla/231-5284/98 (H5N2)
2 >A/chicken/Aguascalientes/124-3705/98 (H5N2) G.A..A....ATG.G...A.....------------------------------ G....C...TC...-------------------------------------- C.C.GG..CA.......TGA------------------------------ T........AA...TCA.T..T..A.C..CC.CGAG.G.T.AGAT...TGATAAT...CG......T..TA. TGGG...T.GAA.GGC...CC------------ A.T.....AG.....A..TAG..A..GT....G.....A.....C..CC A.C...A.....CTTG.....C.A A....TC..GA..CA....TATG.T..G.AA 434 218 , 161 108 2:>A/chicken/Aguascalientes/124-3705/98 (H5N2)
3 >A/chicken/Queretaro/14588-19/1995(H5N2) .G..................T.....................A.A......... ...............C.T........T......................TA. ....G...C.....T...GA.........T.......A............ .......................A.............G........A........C.A....A..TT.T..A ....GT...............G....T..A... .....AG....T...A...A......G.....G................ ......AA...A..T...A..C.. ........CGA...G......TG....G... 141 51 , 119 51 3:>A/chicken/Queretaro/14588-19/1995(H5N2)
4 >A/Chicken/Hidalgo/26654-1368/94 (H5N2) .G.....A.....A.G....T.....G................T.........G ...............C........A...............T...T......A ...................................A........C...CA GCTGCTGG...GTG.........A.T.............................C......A......... ....GT...........T............... ......G....T........................G............ ------------------------ .A.CG..C...............A....A.. 153 68 , 46 44 4:>A/Chicken/Hidalgo/26654-1368/94 (H5N2)
5 >A/Chicken/Mexico/26654-1374/94 (H5N2) .G.....A.....A.G....T.....G................T.........G ...............C........A...............T...T......A ...................................A........C...CA GCTGCTGG...GTG.........A.T.............................C......A......... ....GT...........T............... ......G....T........................G............ ----A------------------- .A.CG..C...............A....A.. 154 68 , 48 45 5:>A/Chicken/Mexico/26654-1374/94 (H5N2)
6 >A/chicken/Hidalgo/28159-232/1994(H5N2) .G...........A.GT...TG.....................T.......... G..............N........A...............T...T......A ...................................A........C...CA .......................A.T..........C...A....G.........C......A......... ....GT...........T............... ......G....T........................G............ .G........G.....AA.C.... .A.CG..C...............A....... 55 40 , 55 40 6:>A/chicken/Hidalgo/28159-232/1994(H5N2)
7 >A/chicken/Hidalgo/232/94 (H5N2) .G...........A.GT...TG..------------------------------ G.............-------------------------------------- ....................------------------------------ .......................A............C...A....G.........C......A......... ....GT...........T...------------ ......G....T........................G............ .G........G.....AA.C.... ------------------------------- 357 165 , 28 24 7:>A/chicken/Hidalgo/232/94 (H5N2)
8 >A/chicken/Mexico/31381-7/94 (H5N2) ......G..T..............------------------------------ ......C.......-------------------------------------- .............T......------------------------------ ....G....................................A..T.......AA...T..G........... ............A........------------ ..........T..........C...C.............C...T..... ..C.........C.T......... ............................... 336 130 , 63 20 8:>A/chicken/Mexico/31381-7/94 (H5N2)
9 >A/Chicken/Puebla/8623-607/94 (H5N2) ...A.....T..G.......A.G.CG.CTGGGTCTCCATGAA...GCGCTAAC. .TTTT...AA..CAG.GGGAAAAC.A.AGATTAATGCCGA.ATT.TTCTT.. .T.A..AG..A.ATTTG...CAACACCTG.AGAAT.G.TTGGAC.TGA.. ..........A....C.G...T........A............AT.A...ATAA..TT.......T..T..A ......A.A...A...A.A..GAATT.ACAATA ...AC.....T..CC.T....CA.TC..CG....C....C......G.. ----AA------------------ ..A.....CGA....ATCC............ 277 183 , 176 161 9:>A/Chicken/Puebla/8623-607/94 (H5N2)
10 >A/Chicken/Puebla/14585-622/94 (H5N2) ...A.....T..G.......A.G.CG.CTGGGTCTCCATGAA...GCGCTAAC. .TTTT...AA..CAG.GGGAAAAC.A.AGATTAATGCCGA.ATT.TTCTT.. .T.A..AG..A.ATTTG...CAACACCTG.AGAAT.G.TTGGAC.TGA.. ------------------------------------------------------------------------ ......A.A...A...A.A..GAATT.ACAATA ...AC....GT.ACC.T....CA.TC..CG....C....C......G.. ----A------------------- ..A.....CGA....ATCC............ 410 240 , 154 145 10:>A/Chicken/Puebla/14585-622/94 (H5N2)
11 >A/chicken/Puebla/28159-474/95 (H5N2) ....CA..T........A.A...G------------------------------ .......G...G..-------------------------------------- ...........C.T......------------------------------ ........AA.......G.CT.T....TC..A......G........A........TT..GA.AC..G.... ............A....TA..------------ .G...A.A.GT.T....T...C...C....AT.T.T.G.CCAA..G... A..A...TTTG.........C.T. ...........TT.A........A.TT.... 350 174 , 77 64 11:>A/chicken/Puebla/28159-474/95 (H5N2)
12 >A/chicken/Chis/15224/1997(H5N2) ....CA..T........A.A...G......G..C......A.A.A.CG....C. ...TT..G...G....G........AT.GA....G...G......T....A. ...........C.T......CAA.A.C.GT.......A............ ........AA.......G.CT.T....TC........GG..C.....A........TT..GA.AC..G.... ....GT...........T........T...... .G...A.A.GT.T....T...C...C....A..T.T.G.CCAAT.G... A..A.A.TTTG.........C.T. ...........TT.A.T..T...A.TT.... 261 96 , 261 96 12:>A/chicken/Chis/15224/1997(H5N2)
die HP-Puebla Viren scheinen eine ganz andere Variante zu sein
und sind wohl nicht 1993/4 aus den anderen Viren "entstanden",
der gemeinsame Ahnherr liegt weiter zurueck.
Sie aehneln dem Chis/15224/1997
Indizien fuer Reassortment in Chis (NP) und 26654 (HA)
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